456C	Matrix Metalloprotease	date	Aug 06, 1998
title	Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A D Ether Sulphone Based Hydroxamic Acid
authors	B.Lovejoy, A.Welch, S.Carr, C.Luong, C.Broka, R.T.Hendricks, J.Cam K.Walker, R.Martin, H.Van Wart, M.F.Browner
compound		source
Molecule: Mmp-13 Chain: A, B Fragment: Catalytic Domain, Residues 110-269 Synonym: Collagenase-3 Ec: 3.4.24.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: Cdna Construct
symmetry	Space Group: C 1 2 1	R_factor 0.216 R_Free 0.338
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.004 35.622 94.875 90.00 131.19 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CA, CBP, ZN	enzyme	Hydrolase E.C.3.4.24 BRENDA
related structures	by homologous chain: 1D8F, 1JAN, 1JAO
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors., Lovejoy B, Welch AR, Carr S, Luong C, Broka C, Hendricks RT, Campbell JA, Walker KA, Martin R, Van Wart H, Browner MF, Nat Struct Biol 1999 Mar;6(3):217-21. PMID:10074939

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (456c.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 456C CSU: Contacts of Structural Units for 456C Likely Quarternary Molecular Structure file(s) for 456C Retrieve 456C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 456C from S2C, [Save to disk]

View 456C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 456C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 456C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d456ca_, region A [Jmol] [rasmolscript] [script source]     - Domain d456cb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [456c_A] [456c] [456c_B] SWISS-PROT database: [P45452] Domain organization of [MMP13_HUMAN] by SWISSPFAM Domain found in 456C: [ZnMc ] by SMART

Other resources with information on 456C

Community annotation for 456C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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