468D CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O-(2-METHOXYETHYL)-RNA date
authors Teplova, M., Minasov, G., Tereshko, V., Inamati, G., Cook, P.D., Egli, M.
compound source
symmetry
R_factor
R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand A44, C43, G48, MG, U36 enzyme
Primary referenceCrystal structure and improved antisense properties of 2'-O-(2-methoxyethyl)-RNA., Teplova M, Minasov G, Tereshko V, Inamati GB, Cook PD, Manoharan M, Egli M, Nat Struct Biol 1999 Jun;6(6):535-9. PMID:10360355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (468d.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 468D
  • CSU: Contacts of Structural Units for 468D
  • Likely Quarternary Molecular Structure file(s) for 468D
  • Structure Factors (49 Kb)
  • Retrieve 468D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 468D from S2C, [Save to disk]
  • Re-refined 468d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 468D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 468D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 468D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [468d_A] [468d_B] [468d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 468D
  • Community annotation for 468D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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