4A00 Transferase date Sep 06, 2011
title Structure Of An Engineered Aspartate Aminotransferase
authors F.J.Fernandez, D.Devries, E.Pena-Soler, M.Coll, P.Christen, H.Geh M.C.Vega
compound source
Molecule: Aspartate Aminotransferase
Chain: A
Synonym: Aspat, Transaminase A,
Ec: 2.6.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Ty103
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ty103
Expression_system_vector_type: Plasmid
Expression_system_vector: Pkdhe19
symmetry Space Group: C 2 2 21
R_factor 0.206 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.149 153.999 80.188 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand GOL, PEG, PP3 enzyme Transferase E.C.2.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and mechanism of a cysteine sulfinate desulfinase engineered on the aspartate aminotransferase scaffold., Fernandez FJ, de Vries D, Pena-Soler E, Coll M, Christen P, Gehring H, Vega MC, Biochim Biophys Acta. 2011 Nov 23;1824(2):339-349. PMID:22138634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (4a00.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 4A00
  • CSU: Contacts of Structural Units for 4A00
  • Structure Factors (326 Kb)
  • Retrieve 4A00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A00 from S2C, [Save to disk]
  • Re-refined 4a00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A00
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A00, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a00] [4a00_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A00
  • Community annotation for 4A00 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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