4A3N Transcription date Oct 01, 2011
title Crystal Structure Of Hmg-Box Of Human Sox17
authors N.Gao, H.Gao, H.Qian, S.Si, Y.Xie
compound source
Molecule: Transcription Factor Sox-17
Chain: A
Fragment: Hmg-Box, Residues 68-136
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-4t-2
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.281 22.525 66.668 90.00 129.09 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme
Primary referenceStructural Basis of Human Transcription Factor Sry-related Box 17 Binding to DNA., Gao N, Jiang W, Gao H, Cheng Z, Qian H, Si S, Xie Y, Protein Pept Lett. 2012 Oct 11. PMID:23061670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (4a3n.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4A3N
  • CSU: Contacts of Structural Units for 4A3N
  • Structure Factors (43 Kb)
  • Retrieve 4A3N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A3N from S2C, [Save to disk]
  • Re-refined 4a3n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4A3N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4A3N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A3N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a3n_A] [4a3n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A3N: [HMG ] by SMART
    • Other resources with information on 4A3N
  • Community annotation for 4A3N at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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