4A50 Cell Cycle date Oct 24, 2011
title Crystal Structure Of Human Kinesin Eg5 In Complex With 2-Ami Methylphenyl)-5,5-Diphenylpentanoic Acid
authors H.Y.K.Kaan, F.Kozielski
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A
Fragment: Motor Domain, Residues 1-368
Synonym: Eg5, Kinesin-Like Protein 1, Kinesin-Like Spindle Kinesin-Related Motor Protein Eg5, Thyroid Receptor-Interac Protein 5, Tr-Interacting Protein 5, Trip-5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
symmetry Space Group: I 21 3
R_factor 0.198 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.540 158.540 158.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand ADP, DQ6, DQ7, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTriphenylbutanamines: kinesin spindle protein inhibitors with in vivo antitumor activity., Wang F, Good JA, Rath O, Kaan HY, Sutcliffe OB, Mackay SP, Kozielski F, J Med Chem. 2012 Feb 23;55(4):1511-25. Epub 2012 Feb 13. PMID:22248262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4a50.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4A50
  • CSU: Contacts of Structural Units for 4A50
  • Structure Factors (246 Kb)
  • Retrieve 4A50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A50 from S2C, [Save to disk]
  • Re-refined 4a50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A50
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A50, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a50] [4a50_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A50: [KISc ] by SMART
  • Other resources with information on 4A50
  • Community annotation for 4A50 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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