4A55 Transferase date Oct 24, 2011
title Crystal Structure Of P110alpha In Complex With Ish2 Of P85al The Inhibitor Pik-108
authors W.C.Hon, A.Berndt, R.L.Williams
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Alpha Isoform;
Chain: A
Synonym: Pi3-Kinase Subunit Alpha, Pi3k-Alpha, Pi3kalpha, P Kinase Subunit Alpha, Phosphatidylinositol-4\,5-Bisphosphat 110 Kda Catalytic Subunit Alpha, Ptdins-3-Kinase Subunit P1 P110alpha, Phosphoinositide-3-Kinase Catalytic Alpha Polype Serinethreonine Protein Kinase Pik3ca;
Ec: 2.7.1.153, 2.7.11.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac

Molecule: Phosphatidylinositol 3-Kinase Regulatory Subunit
Chain: B
Fragment: Nish2, Residues 322-600
Synonym: Pi3-Kinase Regulatory Subunit Alpha, Pi3k Regulato Alpha, Ptdins-3-Kinase Regulatory Subunit Alpha, Phosphatid 3-Kinase 85 Kda Regulatory Subunit Alpha, Pi3-Kinase Subuni Alpha, Ptdins-3-Kinase Regulatory Subunit P85-Alpha;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: I 2 2 2
R_factor 0.183 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.092 147.184 226.478 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand P08 enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein serine/threonine kin...
  • protein kinase activator act...


  • Primary referenceRegulation of lipid binding underlies the activation mechanism of class IA PI3-kinases., Hon WC, Berndt A, Williams RL, Oncogene. 2011 Nov 28. doi: 10.1038/onc.2011.532. PMID:22120714
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]
  • Biological Unit Coordinates (4a55.pdb1.gz) 402 Kb
  • LPC: Ligand-Protein Contacts for 4A55
  • CSU: Contacts of Structural Units for 4A55
  • Structure Factors (414 Kb)
  • Retrieve 4A55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A55 from S2C, [Save to disk]
  • Re-refined 4a55 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A55
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A55, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a55_B] [4a55] [4a55_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4A55: [C2] [PI3K_C2] [PI3K_p85B] [PI3K_rbd] [PI3Ka] [PI3Kc] [SH2 ] by SMART
  • Other resources with information on 4A55
  • Community annotation for 4A55 at PDBWiki (http://pdbwiki.org)
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