4A5P Protein Transport date Oct 26, 2011
title Structure Of The Shigella Flexneri Mxia Protein
authors P.Abrusci, M.Vegara-Irigaray, S.Johnson, P.Roversi, M.E.Friede, J C.M.Tang, S.M.Lea
compound source
Molecule: Protein Mxia
Chain: A, B, C
Fragment: Cytoplasmic Globular Domain, Residues 318-686
Synonym: Protein Virh
Engineered: Yes
Organism_scientific: Shigella Flexneri
Organism_taxid: 424718
Strain: 5a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Pacyc Duet
symmetry Space Group: P 63
R_factor 0.231 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.610 160.610 100.490 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
ligand EDO, MLY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceArchitecture of the major component of the type III secretion system export apparatus., Abrusci P, Vergara-Irigaray M, Johnson S, Beeby MD, Hendrixson DR, Roversi P, Friede ME, Deane JE, Jensen GJ, Tang CM, Lea SM, Nat Struct Mol Biol. 2013 Jan;20(1):99-104. doi: 10.1038/nsmb.2452. Epub 2012 Dec, 9. PMID:23222644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (4a5p.pdb1.gz) 916 Kb
  • Biological Unit Coordinates (4a5p.pdb2.gz) 103 Kb
  • Biological Unit Coordinates (4a5p.pdb3.gz) 108 Kb
  • Biological Unit Coordinates (4a5p.pdb4.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4A5P
  • CSU: Contacts of Structural Units for 4A5P
  • Structure Factors (469 Kb)
  • Retrieve 4A5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A5P from S2C, [Save to disk]
  • Re-refined 4a5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A5P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A5P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a5p_A] [4a5p_C] [4a5p] [4a5p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A5P
  • Community annotation for 4A5P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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