4A5Y Motor Protein date Oct 29, 2011
title Intermediate State Of Human Kinesin Eg5 In Complex With Ispi
authors H.Y.K.Kaan, F.Kozielski
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A, B, C
Fragment: Motor Domain, Residues 1-368
Synonym: Kinesin-Like Protein 1, Kinesin-Like Spindle Prote Kinesin-Related Motor Protein Eg5, Thyroid Receptor-Interac Protein 5, Tr-Interacting Protein 5, Trip-5, Eg5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.630 91.930 163.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand ADP, CL, G7X, MG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary reference"Snapshots" of ispinesib-induced conformational changes in the mitotic kinesin Eg5., Kaan HY, Major J, Tkocz K, Kozielski F, Rosenfeld SS, J Biol Chem. 2013 Jun 21;288(25):18588-98. doi: 10.1074/jbc.M113.462648. Epub, 2013 May 8. PMID:23658017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4a5y.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 4A5Y
  • CSU: Contacts of Structural Units for 4A5Y
  • Structure Factors (2600 Kb)
  • Retrieve 4A5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A5Y from S2C, [Save to disk]
  • Re-refined 4a5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A5Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a5y] [4a5y_B] [4a5y_A] [4a5y_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A5Y: [KISc ] by SMART
  • Other resources with information on 4A5Y
  • Community annotation for 4A5Y at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science