4A7J Transcription date Nov 14, 2011
title Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Supports Euchromatin Maintenance
authors V.Migliori, J.Muller, S.Phalke, D.Low, M.Bezzi, W.Chuenmok, J.Guna P.Capasso, C.Bassi, V.Cecatiello, A.Demarco, W.Blackstock, V.Kuz B.Amati, M.Mapelli, E.Guccione
compound source
Molecule: Wd Repeat-Containing Protein 5
Chain: A
Fragment: Residues 21-334
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex

Molecule: Histone H3.1t
Chain: B
Fragment: Histone Tail, Residues 1-16
Synonym: H3t, H3t, H3g
Engineered: Yes
Other_details: Symmetrically Dimethylated Arginine 2

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.600 46.800 65.000 90.00 104.33 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 2MR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSymmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance., Migliori V, Muller J, Phalke S, Low D, Bezzi M, Mok WC, Sahu SK, Gunaratne J, Capasso P, Bassi C, Cecatiello V, De Marco A, Blackstock W, Kuznetsov V, Amati B, Mapelli M, Guccione E, Nat Struct Mol Biol. 2012 Jan 8;19(2):136-44. doi: 10.1038/nsmb.2209. PMID:22231400
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4a7j.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4A7J
  • CSU: Contacts of Structural Units for 4A7J
  • Structure Factors (179 Kb)
  • Retrieve 4A7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A7J from S2C, [Save to disk]
  • Re-refined 4a7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A7J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A7J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a7j] [4a7j_A] [4a7j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A7J: [WD40 ] by SMART
  • Other resources with information on 4A7J
  • Community annotation for 4A7J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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