4A7U Oxidoreductase date Nov 14, 2011
title Structure Of Human I113t Sod1 Complexed With Adrenaline In The P21 Space Group.
authors G.S.A.Wright, S.V.Antonyuk, N.M.Kershaw, R.W.Strange, S.S.Hasnai
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, F
Synonym: Superoxide Dismutase-1, Superoxide Dismutase 1, Hs
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet303
symmetry Space Group: P 1 21 1
R_factor 0.13803 R_Free 0.15349
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.300 68.100 50.200 90.00 104.70 90.00
method X-Ray Diffractionresolution 0.98 Å
ligand ACT, ALE, CU, SO4, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceLigand binding and aggregation of pathogenic SOD1., Wright GS, Antonyuk SV, Kershaw NM, Strange RW, Samar Hasnain S, Nat Commun. 2013 Apr 23;4:1758. doi: 10.1038/ncomms2750. PMID:23612299
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (4a7u.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 4A7U
  • CSU: Contacts of Structural Units for 4A7U
  • Structure Factors (977 Kb)
  • Retrieve 4A7U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A7U from S2C, [Save to disk]
  • Re-refined 4a7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A7U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A7U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A7U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a7u_A] [4a7u] [4a7u_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A7U
  • Community annotation for 4A7U at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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