4AAA Transferase date Nov 30, 2011
title Crystal Structure Of The Human Cdkl2 Kinase Domain
authors P.Canning, M.Vollmar, C.D.O.Cooper, P.Mahajan, N.Daga, G.Berridge N.Burgess-Brown, J.R.C.Muniz, T.Krojer, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock
compound source
Molecule: Cyclin-Dependent Kinase-Like 2
Chain: A
Fragment: Kinase Domain, Residues 1-308
Synonym: Protein Kinase P56 Kkiamre, Serinethreonine-Prote Kkiamre;
Ec: 2.7.11.22
Engineered: Yes
Mutation: Yes
Other_details: His85 Conformation B And Asp84 Conformation Be Occupied Simultaneously.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.819 70.220 83.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand DKI, EDO enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4aaa.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4AAA
  • CSU: Contacts of Structural Units for 4AAA
  • Structure Factors (2801 Kb)
  • Retrieve 4AAA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AAA from S2C, [Save to disk]
  • Re-refined 4aaa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AAA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AAA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AAA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aaa_A] [4aaa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AAA: [S_TKc ] by SMART
  • Other resources with information on 4AAA
  • Community annotation for 4AAA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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