4ABL Transferase date Dec 08, 2011
title Human Parp14 (Artd8, Bal2) - Macro Domain 3
authors T.Karlberg, M.Moche, A.G.Thorsell, C.H.Arrowsmith, C.Bountra, A.M T.Ekblad, J.Weigelt, H.Schuler
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A
Fragment: Macro Domain 3, Residues 1208-1388
Synonym: Adp-Ribose Transferase, Parp-14, B Aggressive Lymp Protein 2;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.705 41.066 108.918 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand BR enzyme Transferase E.C.2.4.2.30 BRENDA
Primary referenceRecognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (4abl.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4ABL
  • CSU: Contacts of Structural Units for 4ABL
  • Structure Factors (356 Kb)
  • Retrieve 4ABL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ABL from S2C, [Save to disk]
  • Re-refined 4abl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ABL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ABL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ABL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4abl] [4abl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ABL: [A1pp ] by SMART
  • Other resources with information on 4ABL
  • Community annotation for 4ABL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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