4AE6 Transferase date Jan 09, 2012
title Structure And Function Of The Human Sperm-Specific Isoform O Kinase A (Pka) Catalytic Subunit Calpha 2
authors T.H.Hereng, P.H.Backe, J.Kahmann, C.Scheich, M.Bjoras, B.S.Skalhe K.R.Rosendal
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A, B
Synonym: Pka C-Alpha, Pka C-Alpha 2
Ec: 2.7.11.11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Spermatozoa
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet24
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.776 89.495 114.815 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and function of the human sperm-specific isoform of protein kinase A (PKA) catalytic subunit Calpha2., Hereng TH, Backe PH, Kahmann J, Scheich C, Bjoras M, Skalhegg BS, Rosendal KR, J Struct Biol. 2012 Jun;178(3):300-10. doi: 10.1016/j.jsb.2012.03.013. Epub 2012 , Apr 6. PMID:22504716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4ae6.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (4ae6.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4AE6
  • CSU: Contacts of Structural Units for 4AE6
  • Structure Factors (618 Kb)
  • Retrieve 4AE6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AE6 from S2C, [Save to disk]
  • Re-refined 4ae6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AE6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AE6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AE6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ae6] [4ae6_B] [4ae6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AE6: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 4AE6
  • Community annotation for 4AE6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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