4AFK In meso structure of alginate transporter, AlgE, from Pseudomonas aeruginosa, PAO1 date
authors Tan, J., Pye, V.E., Aragao, D., Caffrey, M.
compound source
symmetry
R_factor
R_Free 0.2086
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 78M, 78N, CA, FLC, LDA, NA, PE5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA conformational landscape for alginate secretion across the outer membrane of Pseudomonas aeruginosa., Tan J, Rouse SL, Li D, Pye VE, Vogeley L, Brinth AR, El Arnaout T, Whitney JC, Howell PL, Sansom MS, Caffrey M, Acta Crystallogr D Biol Crystallogr. 2014 Aug 1;70(Pt 8):2054-68. doi:, 10.1107/S1399004714001850. Epub 2014 Jul 25. PMID:25084326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4afk.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 4AFK
  • CSU: Contacts of Structural Units for 4AFK
  • Structure Factors (826 Kb)
  • Retrieve 4AFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AFK from S2C, [Save to disk]
  • Re-refined 4afk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AFK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AFK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4afk_A] [4afk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4AFK
  • Community annotation for 4AFK at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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