4AFS Hydrolase De Novo Protein date Jan 23, 2012
title Human Chymase - Fynomer Complex
authors D.Schlatter, S.Brack, D.W.Banner, S.Batey, J.Benz, J.Bertschinger C.Joseph, A.Rufer, A.Van Der Kloosters, M.Weber, D.Grabulovski,
compound source
Molecule: Chymase
Chain: A
Synonym: Alpha-Chymase, Mast Cell Protease I
Ec: 3.4.21.39
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fynomer
Chain: C
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.18662 R_Free 0.23796
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.584 89.072 48.494 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, PO4, ZN enzyme Hydrolase E.C.3.4.21.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGeneration, characterization and structural data of chymase binding proteins based on the human Fyn kinase SH3 domain., Schlatter D, Brack S, Banner DW, Batey S, Benz J, Bertschinger J, Huber W, Joseph C, Rufer A, van der Klooster A, Weber M, Grabulovski D, Hennig M, MAbs. 2012 Jul 1;4(4):497-508. Epub 2012 Jul 1. PMID:22653218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (4afs.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4AFS
  • CSU: Contacts of Structural Units for 4AFS
  • Structure Factors (560 Kb)
  • Retrieve 4AFS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AFS from S2C, [Save to disk]
  • Re-refined 4afs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AFS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AFS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AFS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4afs] [4afs_A] [4afs_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AFS: [SH3] [Tryp_SPc ] by SMART
  • Other resources with information on 4AFS
  • Community annotation for 4AFS at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science