4AFZ Hydrolase De Novo Protein date Jan 23, 2012
title Human Chymase - Fynomer Complex
authors D.Schlatter, S.Brack, D.W.Banner, S.Batey, J.Benz, J.Bertschinger C.Joseph, A.Rufer, A.Van Der Kloosters, M.Weber, D.Grabulovski,
compound source
Molecule: Chymase
Chain: A, B
Synonym: Alpha-Chymase, Mast Cell Protease I
Ec: 3.4.21.39
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fynomer
Chain: C, D
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.17793 R_Free 0.24076
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.269 58.341 93.032 90.00 103.76 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand TAR enzyme Hydrolase E.C.3.4.21.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGeneration, characterization and structural data of chymase binding proteins based on the human Fyn kinase SH3 domain., Schlatter D, Brack S, Banner DW, Batey S, Benz J, Bertschinger J, Huber W, Joseph C, Rufer A, van der Klooster A, Weber M, Grabulovski D, Hennig M, MAbs. 2012 Jul 1;4(4):497-508. Epub 2012 Jul 1. PMID:22653218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (4afz.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (4afz.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4AFZ
  • CSU: Contacts of Structural Units for 4AFZ
  • Structure Factors (572 Kb)
  • Retrieve 4AFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AFZ from S2C, [Save to disk]
  • Re-refined 4afz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AFZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AFZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4afz_B] [4afz] [4afz_D] [4afz_C] [4afz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AFZ: [SH3] [Tryp_SPc ] by SMART
  • Other resources with information on 4AFZ
  • Community annotation for 4AFZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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