4AH3 Transferase date Feb 03, 2012
title Crystal Structure Of The Holo Omega-Transaminase From Chromo Violaceum
authors C.Sayer, M.N.Isupov, J.A.Littlechild
compound source
Molecule: Omega-Transaminase
Chain: A, B, C, D
Ec: 2.6.1.18
Engineered: Yes
Organism_scientific: Chromobacterium Violaceum
Organism_taxid: 536
Strain: Dsm30191
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_variant: Bl21
symmetry Space Group: P 1
R_factor 0.222 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.890 62.230 119.610 75.14 81.73 76.17
method X-Ray Diffractionresolution 1.57 Å
ligand PLP enzyme Transferase E.C.2.6.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural studies of Pseudomonas and Chromobacterium omega-aminotransferases provide insights into their differing substrate specificity., Sayer C, Isupov MN, Westlake A, Littlechild JA, Acta Crystallogr D Biol Crystallogr. 2013 Apr;69(Pt 4):564-76. doi:, 10.1107/S0907444912051670. Epub 2013 Mar 14. PMID:23519665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (4ah3.pdb1.gz) 164 Kb
  • Biological Unit Coordinates (4ah3.pdb2.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 4AH3
  • CSU: Contacts of Structural Units for 4AH3
  • Structure Factors (3203 Kb)
  • Retrieve 4AH3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AH3 from S2C, [Save to disk]
  • Re-refined 4ah3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AH3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AH3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AH3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ah3] [4ah3_B] [4ah3_A] [4ah3_D] [4ah3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AH3
  • Community annotation for 4AH3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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