4AJI	Oxidoreductase Inhibitor	date	Feb 16, 2012
title	Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)Methyl))Pro Acid
authors	J.A.Tucker, C.Brassington, G.Hassall, M.Vogtherr, R.Ward, J.Tart, J.Debreczeni
compound		source
Molecule: L-Lactate Dehydrogenase A Chain Chain: A, B, C, D Synonym: Lactate Dehydrogenase A, Ldh-A, Ldh Muscle Subunit Ec: 1.1.1.27 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Tissue: Muscle Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Star Expression_system_vector_type: Plasmid Expression_system_vector: Pet29b
symmetry	Space Group: P 1 21 1	R_factor 0.162 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.923 81.649 128.994 90.00 96.08 90.00
method	X-Ray Diffraction	resolution	1.93 Å
ligand	88R BindingDB	enzyme	Oxidoreductase E.C.1.1.1.27 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Design and synthesis of novel lactate dehydrogenase a inhibitors by fragment-based lead generation., Ward RA, Brassington C, Breeze AL, Caputo A, Critchlow S, Davies G, Goodwin L, Hassall G, Greenwood R, Holdgate GA, Mrosek M, Norman RA, Pearson S, Tart J, Tucker JA, Vogtherr M, Whittaker D, Wingfield J, Winter J, Hudson K, J Med Chem. 2012 Apr 12;55(7):3285-306. Epub 2012 Mar 26. PMID:22417091

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (432 Kb) [Save to disk] Biological Unit Coordinates (4aji.pdb1.gz) 425 Kb LPC: Ligand-Protein Contacts for 4AJI CSU: Contacts of Structural Units for 4AJI Structure Factors (1273 Kb) Retrieve 4AJI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AJI from S2C, [Save to disk] Re-refined 4aji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AJI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AJI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AJI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4aji_D] [4aji_A] [4aji_B] [4aji_C] [4aji] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4AJI

Community annotation for 4AJI at PDBWiki (http://pdbwiki.org)

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