4ANM Transferase date Mar 20, 2012
title Complex Of Ck2 With A Cdc7 Inhibitor
authors T.J.Stout
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Fragment: Kinase Domain, Residues 2-332
Synonym: Ck II, Ck2-Alpha, Ck2
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.16444 R_Free 0.20184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.061 60.549 44.747 90.00 102.92 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand WUL enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of XL413, a potent and selective CDC7 inhibitor., Koltun ES, Tsuhako AL, Brown DS, Aay N, Arcalas A, Chan V, Du H, Engst S, Ferguson K, Franzini M, Galan A, Holst CR, Huang P, Kane B, Kim MH, Li J, Markby D, Mohan M, Noson K, Plonowski A, Richards SJ, Robertson S, Shaw K, Stott G, Stout TJ, Young J, Yu P, Zaharia CA, Zhang W, Zhou P, Nuss JM, Xu W, Kearney PC, Bioorg Med Chem Lett. 2012 Jun 1;22(11):3727-31. Epub 2012 Apr 16. PMID:22560567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (4anm.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4ANM
  • CSU: Contacts of Structural Units for 4ANM
  • Structure Factors (541 Kb)
  • Retrieve 4ANM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ANM from S2C, [Save to disk]
  • Re-refined 4anm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ANM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ANM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ANM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4anm] [4anm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ANM: [S_TKc ] by SMART
  • Other resources with information on 4ANM
  • Community annotation for 4ANM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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