4AQH Hydolase Inhibitor date Apr 17, 2012
title Plasminogen Activator Inhibitor Type-1 In Complex With The I Az3976
authors O.Fjellstrom, J.Deinum, T.Sjogren, C.Johansson, S.Geschwindner, V A.Legnehed, J.Mcpheat, K.Olsson, C.Bodin, D.Gustafsson
compound source
Molecule: Plasminogen Activator Inhibitor 1
Chain: A, B, C
Synonym: Pai, Pai-1, Endothelial Plasminogen Activator Inhi Serpin E1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 31
R_factor 0.157 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.399 119.399 99.691 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand TB7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • negative regulation of endop...
  • negative regulation of smoot...

    • Primary referenceCharacterization of a small molecule inhibitor of plasminogen activator inhibitor type 1 that accelerates the transition into the latent conformation., Fjellstrom O, Deinum J, Sjogren T, Johansson C, Geschwindner S, Nerme V, Legnehed A, McPheat J, Olsson K, Bodin C, Paunovic A, Gustafsson D, J Biol Chem. 2013 Jan 11;288(2):873-85. doi: 10.1074/jbc.M112.371732. Epub 2012, Nov 15. PMID:23155046
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (4aqh.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4aqh.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (4aqh.pdb3.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 4AQH
  • CSU: Contacts of Structural Units for 4AQH
  • Structure Factors (1041 Kb)
  • Retrieve 4AQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AQH from S2C, [Save to disk]
  • Re-refined 4aqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AQH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AQH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aqh_C] [4aqh] [4aqh_B] [4aqh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AQH: [SERPIN ] by SMART
    • Other resources with information on 4AQH
  • Community annotation for 4AQH at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science