4ASC	Protein Binding	date	Apr 30, 2012
title	Crystal Structure Of The Kelch Domain Of Human Kbtbd5
authors	P.Canning, V.Ayinampudi, T.Krojer, C.Strain-Damerell, J.Raynor, F Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.N.Bullock, Stru Genomics Consortium (Sgc)
compound		source
Molecule: Kelch Repeat And Btb Domain-Containing Protein 5 Chain: A Fragment: Kelch Domain, Residues 314-616 Synonym: Kbtbd5, Sarcosynapsin Engineered: Yes Other_details: Cys 340 Was Oxidised In The Crystal Structur		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: R3-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Cthf Other_details: Mammalian Gene Collection (Mgc)
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.330 64.950 89.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.78 Å
ligand	CSO, EDO	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for Cul3 assembly with the BTB-Kelch family of E3 ubiquitin ligases., Canning P, Cooper CD, Krojer T, Murray JW, Pike AC, Chaikuad A, Keates T, Thangaratnarajah C, Hojzan V, Marsden BD, Gileadi O, Knapp S, von Delft F, Bullock AN, J Biol Chem. 2013 Jan 24. PMID:23349464

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (4asc.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 4ASC CSU: Contacts of Structural Units for 4ASC Structure Factors (1183 Kb) Retrieve 4ASC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4ASC from S2C, [Save to disk] Re-refined 4asc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ASC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4ASC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4ASC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4asc] [4asc_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4ASC: [Kelch ] by SMART

Other resources with information on 4ASC

Community annotation for 4ASC at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---