4ASD	Transferase	date	Apr 30, 2012
title	Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domain Complex With Sorafenib (Bay 43-9006)
authors	M.Mctigue, Y.Deng, K.Ryan, A.Brooun, W.Diehl, A.Stewart
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Juxtamembrane And Kinase Domains, Residues 787-93 Residues 990-1171; Synonym: Vegfr-2,2.7.10.1, Fetal Liver Kinase 1, Flk-1, Kin Domain Receptor, Kdr, Protein-Tyrosine Kinase Receptor Flk- Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.175 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.818 56.479 52.052 90.00 95.42 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	BAX BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Feature Article: Molecular conformations, interactions, and properties associated with drug efficiency and clinical performance among VEGFR TK inhibitors., McTigue M, Murray BW, Chen JH, Deng YL, Solowiej J, Kania RS, Proc Natl Acad Sci U S A. 2012 Sep 17. PMID:22988103

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (4asd.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 4ASD CSU: Contacts of Structural Units for 4ASD Structure Factors (358 Kb) Retrieve 4ASD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4ASD from S2C, [Save to disk] Re-refined 4asd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 4ASD

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4ASD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4asd_A] [4asd] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4ASD: [TyrKc ] by SMART

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