4AT4 Transferase date May 03, 2012
title Crystal Structure Of Trkb Kinase Domain In Complex With Ex42
authors T.Bertrand, M.Kothe, J.Liu, A.Dupuy, A.Rak, P.F.Berne, S.Davis, T.Gladysheva, C.Valtre, J.Y.Crenne, M.Mathieu
compound source
Molecule: Bdnfnt-3 Growth Factors Receptor
Chain: A
Fragment: Kinase Domain, Residues 543-838
Synonym: Gp145-Trkb, Trk-B, Neurotrophic Tyrosine Kinase Re Type 2, Trkb Tyrosine Kinase, Tropomyosin-Related Kinase B;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 2
R_factor 0.179 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.080 95.360 46.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.36 Å
ligand T6E enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structures of TrkA and TrkB Suggest Key Regions for Achieving Selective Inhibition., Bertrand T, Kothe M, Liu J, Dupuy A, Rak A, Berne PF, Davis S, Gladysheva T, Valtre C, Crenne JY, Mathieu M, J Mol Biol. 2012 Aug 16. PMID:22902478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4at4.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4AT4
  • CSU: Contacts of Structural Units for 4AT4
  • Structure Factors (293 Kb)
  • Retrieve 4AT4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AT4 from S2C, [Save to disk]
  • Re-refined 4at4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AT4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AT4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AT4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4at4_A] [4at4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AT4: [TyrKc ] by SMART
  • Other resources with information on 4AT4
  • Community annotation for 4AT4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science