4AUN Oxidoreductase date May 18, 2012
title Crystal Structure, Recombinant Expression And Mutagenesis St The Bifunctional Catalase-Phenol Oxidase From Scytalidium Thermophilum
authors Y.Yuzugullu, C.H.Trinh, M.A.Smith, A.R.Pearson, S.E.V.Phillips, D Kocabas, U.Bakir, Z.B.Ogel, M.J.Mcpherson
compound source
Molecule: Catalase-Phenol Oxidase
Chain: A, B, C, D, E, F, G, H
Ec: 1.11.1.6
Engineered: Yes
Organism_scientific: Scytalidium Thermophilum
Organism_taxid: 85995
Atcc: 16454
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a
Expression_system_plasmid: Petcatpo
symmetry Space Group: C 1 2 1
R_factor 0.164 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
253.370 243.290 97.060 90.00 104.16 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand CA, HDD enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • catalase activity
  • peroxidase activity


  • Primary referenceStructure, recombinant expression and mutagenesis studies of the catalase with oxidase activity from Scytalidium thermophilum., Yuzugullu Y, Trinh CH, Smith MA, Pearson AR, Phillips SE, Sutay Kocabas D, Bakir U, Ogel ZB, McPherson MJ, Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):398-408. doi:, 10.1107/S0907444912049001. Epub 2013 Feb 16. PMID:23519415
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (915 Kb) [Save to disk]
  • Biological Unit Coordinates (4aun.pdb1.gz) 459 Kb
  • Biological Unit Coordinates (4aun.pdb2.gz) 453 Kb
  • Biological Unit Coordinates (4aun.pdb3.gz) 458 Kb
  • LPC: Ligand-Protein Contacts for 4AUN
  • CSU: Contacts of Structural Units for 4AUN
  • Structure Factors (24633 Kb)
  • Retrieve 4AUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AUN from S2C, [Save to disk]
  • Re-refined 4aun structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AUN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AUN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aun_B] [4aun_D] [4aun_E] [4aun_C] [4aun_A] [4aun_F] [4aun_G] [4aun_H] [4aun]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AUN: [Catalase ] by SMART
  • Other resources with information on 4AUN
  • Community annotation for 4AUN at PDBWiki (http://pdbwiki.org)

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