4AV3 Hydrolase date May 23, 2012
title Crystal Structure Of Thermotoga Maritima Sodium Pumping Memb Integral Pyrophosphatase With Metal Ions In Active Site
authors T.Kajander, K.Kogan, J.Kellosalo, K.Pokharel, A.Goldman
compound source
Molecule: K(+)-Stimulated Pyrophosphate-Energized Sodium Pu
Chain: A, B
Fragment: Residues 2-726
Synonym: Membrane Integral Pyrophosphatase Membrane-Bound S Translocating Pyrophosphatase, Pyrophosphate-Energized Inor Pyrophosphatase, Na(+)-Ppase, Tm-Ppase;
Ec: 3.6.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj1991
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.520 107.779 102.521 90.00 108.50 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA, MG enzyme Hydrolase E.C.3.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure and catalytic cycle of a sodium-pumping pyrophosphatase., Kellosalo J, Kajander T, Kogan K, Pokharel K, Goldman A, Science. 2012 Jul 27;337(6093):473-6. PMID:22837527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (436 Kb) [Save to disk]
  • Biological Unit Coordinates (4av3.pdb1.gz) 429 Kb
  • LPC: Ligand-Protein Contacts for 4AV3
  • CSU: Contacts of Structural Units for 4AV3
  • Structure Factors (316 Kb)
  • Retrieve 4AV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AV3 from S2C, [Save to disk]
  • Re-refined 4av3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AV3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AV3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4av3_A] [4av3] [4av3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AV3
  • Community annotation for 4AV3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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