4AXA Transferase Transferase Inhibitor date Jun 12, 2012
title Structure Of Pka-Pkb Chimera Complexed With (1s)-2-Amino-1-( 4-Chlorophenyl)-1-(4-(1h-Pyrazol-4-Yl)Phenyl)Ethan-1-Ol
authors T.G.Davies, T.A.Yap, M.I.Walton, K.M.Grimshaw, R.H.Tepoele, P.D.E M.R.Valenti, A.K.Dehavenbrandon, V.Martins, A.Zetterlund, S.P.H K.Heinzmann, P.S.Jones, R.E.Feltell, M.Reule, S.J.Woodhead, J.F. F.I.Raynaud, S.A.Eccles, P.Workman, N.T.Thompson, M.D.Garrett
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Mutation: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha
Chain: I
Fragment: Residues 6-25
Synonym: Pki-Alpha, Camp-Dependent Protein Kinase Inhibitor Musclebrain Isoform
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.21406 R_Free 0.25584
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.914 74.664 80.184 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand RKD, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceAT13148 Is a Novel, Oral Multi-AGC Kinase Inhibitor with Potent Pharmacodynamic and Antitumor Activity., Yap TA, Walton MI, Grimshaw KM, Te Poele RH, Eve PD, Valenti MR, de Haven Brandon AK, Martins V, Zetterlund A, Heaton SP, Heinzmann K, Jones PS, Feltell RE, Reule M, Woodhead SJ, Davies TG, Lyons JF, Raynaud FI, Eccles SA, Workman P, Thompson NT, Garrett MD, Clin Cancer Res. 2012 Jul 15;18(14):3912-23. Epub 2012 Jul 10. PMID:22781553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4axa.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4AXA
  • CSU: Contacts of Structural Units for 4AXA
  • Structure Factors (432 Kb)
  • Retrieve 4AXA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AXA from S2C, [Save to disk]
  • Re-refined 4axa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AXA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AXA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AXA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4axa] [4axa_I] [4axa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AXA: [S_TK_X] [S_TKc ] by SMART
    • Other resources with information on 4AXA
  • Community annotation for 4AXA at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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