4AXC Transferase date Jun 12, 2012
title Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Apo Form
authors J.I Banos-Sanz, J.Sanz-Aparicio, B.Gonzalez
compound source
Molecule: Inositol-Pentakisphosphate 2-Kinase
Chain: A
Synonym: Inositol-1\,3\,4\,5\,6-Pentakisphosphate 2-Kinase, 3\,4\,5\,6)P5 2-Kinase, Atipk1, Insp5 2-Kinase;
Ec: 2.7.1.158
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
Expression_system_vector: Pklslt
symmetry Space Group: P 21 21 2
R_factor 0.242 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.800 68.230 66.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand GOL, SO4, ZN enzyme Transferase E.C.2.7.1.158 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational Changes in Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase upon Substrate Binding: ROLE OF N-TERMINAL LOBE AND ENANTIOMERIC SUBSTRATE PREFERENCE., Banos-Sanz JI, Sanz-Aparicio J, Whitfield H, Hamilton C, Brearley CA, Gonzalez B, J Biol Chem. 2012 Aug 24;287(35):29237-49. Epub 2012 Jun 28. PMID:22745128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (4axc.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 4AXC
  • CSU: Contacts of Structural Units for 4AXC
  • Structure Factors (323 Kb)
  • Retrieve 4AXC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AXC from S2C, [Save to disk]
  • Re-refined 4axc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AXC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AXC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AXC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4axc] [4axc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AXC
  • Community annotation for 4AXC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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