4AYT Membrane Protein date Jun 22, 2012
title Structure Of The Human Mitochondrial Abc Transporter, Abcb10
authors A.C.W.Pike, C.A.Shintre, Q.Li, J.Kim, F.Von Delft, A.J.Barr, S.Das A.Chaikuad, X.Xia, A.Quigley, Y.Dong, L.Dong, T.Krojer, M.Vollmar J.R.C.Muniz, J.E.Bray, G.Berridge, R.Chalk, O.Gileadi, N.Burgess L.Shrestha, S.Goubin, J.Yang, P.Mahajan, S.Mukhopadhyay, A.N.Bul C.H.Arrowsmith, J.Weigelt, C.Bountra, A.M.Edwards, E.P.Carpente
compound source
Molecule: Atp-Binding Cassette Sub-Family B Member 10 Mitoc
Chain: A
Fragment: Abc Transporter, Residues 152-738
Synonym: Atp-Binding Cassette Transporter 10, Abc Transport Protein, Mitochondrial Atp-Binding Cassette 2, M-Abc2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Ct10hf-Lic
symmetry Space Group: P 31 2 1
R_factor 0.201 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.110 175.110 49.550 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand ACP, CDL, GLY, LMT, MG enzyme
note 4AYT supersedes 2YL4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of ABCB10, a human ATP-binding cassette transporter in apo- and nucleotide-bound states., Shintre CA, Pike AC, Li Q, Kim JI, Barr AJ, Goubin S, Shrestha L, Yang J, Berridge G, Ross J, Stansfeld PJ, Sansom MS, Edwards AM, Bountra C, Marsden BD, von Delft F, Bullock AN, Gileadi O, Burgess-Brown NA, Carpenter EP, Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9710-5. doi:, 10.1073/pnas.1217042110. Epub 2013 May 28. PMID:23716676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4ayt.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 4AYT
  • CSU: Contacts of Structural Units for 4AYT
  • Structure Factors (561 Kb)
  • Retrieve 4AYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AYT from S2C, [Save to disk]
  • Re-refined 4ayt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AYT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AYT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ayt_A] [4ayt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AYT: [AAA ] by SMART
  • Other resources with information on 4AYT
  • Community annotation for 4AYT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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