4B0G Transferase date Jul 02, 2012
title Complex Of Aurora-A Bound To An Imidazopyridine-Based Inhibi
authors M.Kosmopoulou, R.Bayliss
compound source
Molecule: Aurora Kinase A
Chain: A
Fragment: Catalytic Domain, Residues 122-403
Synonym: Aurora 2, Auroraipl1-Related Kinase 1, Ark-1, Aur Related Kinase 1, Hark1, Breast Tumor-Amplified Kinase, Serinethreonine-Protein Kinase 15, Serinethreonine-Protei 6, Serinethreonine-Protein Kinase Aurora-A;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.202 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.562 83.562 76.146 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4, VEK enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimization of imidazo[4,5-b]pyridine-based kinase inhibitors: identification of a dual FLT3/Aurora kinase inhibitor as an orally bioavailable preclinical development candidate for the treatment of acute myeloid leukemia., Bavetsias V, Crumpler S, Sun C, Avery S, Atrash B, Faisal A, Moore AS, Kosmopoulou M, Brown N, Sheldrake PW, Bush K, Henley A, Box G, Valenti M, de Haven Brandon A, Raynaud FI, Workman P, Eccles SA, Bayliss R, Linardopoulos S, Blagg J, J Med Chem. 2012 Oct 25;55(20):8721-34. doi: 10.1021/jm300952s. Epub 2012 Oct 8. PMID:23043539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4b0g.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 4B0G
  • CSU: Contacts of Structural Units for 4B0G
  • Structure Factors (165 Kb)
  • Retrieve 4B0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B0G from S2C, [Save to disk]
  • Re-refined 4b0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B0G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B0G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b0g] [4b0g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B0G: [S_TKc ] by SMART
  • Other resources with information on 4B0G
  • Community annotation for 4B0G at PDBWiki (http://pdbwiki.org)

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