4B2Q Hydrolase date Jul 17, 2012
title Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomog Average
authors K.M.Davies, W.Kuehlbrandt
compound source
Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, C, a, c
Fragment: Residues 61-545
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: B, b
Fragment: Residues 60-545

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, d
Fragment: Residues 39-508
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: E, F, e, f
Fragment: Residues 39-511
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G, g
Fragment: Residues 34-311
Synonym: F-Atpase Gamma Subunit

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H, h
Fragment: Residues 29-160
Synonym: F-Atpase Delta Subunit

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit Epsilon, Mitochondrial
Chain: I, I
Fragment: Residues 2-60
Synonym: Atpase Subunit Epsilon

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: J, K, L, M, N, O, P, Q, R, S, j, k, l, m, n, o, p, q
Synonym: Lipid-Binding Protein, Oligomycin Resistance Prote

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: D273-10ba
Organ: Mitochondria

Molecule: Atp Synthase Subunit B, Mitochondrial
Chain: T, t
Fragment: Residues 121-249
Synonym: Atpase Subunit B
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Mitochondria

Molecule: Atp Synthase Subunit D, Mitochondrial
Chain: U, u
Fragment: Residues 5-124
Synonym: Atpase Subunit D

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Mitochondria

Molecule: Atp Synthase-Coupling Factor 6, Mitochondrial
Chain: V, v
Fragment: Residues 36-101
Synonym: Atpase Subunit F6

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Mitochondria

Molecule: Atp Synthase Subunit O, Mitochondrial
Chain: W, w
Fragment: Residues 24-143
Synonym: Oligomycin Sensitivity Conferral Protein, Oscp
Ec: 3.6.3.14

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Mitochondria
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 37.00 Å
ligand ADP, ATP, MG enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, h


I, i


S, N, K, j, k, J, s, q, r, Q, M, L, n, O, P, m, l, p, R, o


T, t


W, w


a, B, c, b, C, A


d, E, e, D, F, f


g, G


u, U


v, V


Primary referenceStructure of the yeast F1Fo-ATP synthase dimer and its role in shaping the mitochondrial cristae., Davies KM, Anselmi C, Wittig I, Faraldo-Gomez JD, Kuhlbrandt W, Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13602-7. Epub 2012 Aug 3. PMID:22864911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1242 Kb) [Save to disk]
  • Biological Unit Coordinates (4b2q.pdb1.gz) 1232 Kb
  • LPC: Ligand-Protein Contacts for 4B2Q
  • CSU: Contacts of Structural Units for 4B2Q
  • Retrieve 4B2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B2Q from S2C, [Save to disk]
  • View 4B2Q in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B2Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B2Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b2q] [4b2q_V] [4b2q_B] [4b2q_a] [4b2q_R] [4b2q_q] [4b2q_O] [4b2q_H] [4b2q_h] [4b2q_K] [4b2q_E] [4b2q_J] [4b2q_b] [4b2q_p] [4b2q_m] [4b2q_o] [4b2q_e] [4b2q_i] [4b2q_F] [4b2q_t] [4b2q_s] [4b2q_f] [4b2q_I] [4b2q_P] [4b2q_S] [4b2q_u] [4b2q_G] [4b2q_r] [4b2q_C] [4b2q_l] [4b2q_L] [4b2q_A] [4b2q_v] [4b2q_d] [4b2q_j] [4b2q_w] [4b2q_N] [4b2q_Q] [4b2q_W] [4b2q_D] [4b2q_k] [4b2q_c] [4b2q_g] [4b2q_n] [4b2q_U] [4b2q_T] [4b2q_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B2Q: [AAA ] by SMART
  • Other resources with information on 4B2Q
  • Community annotation for 4B2Q at PDBWiki (http://pdbwiki.org)
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