4B7T Transferase Peptide date Aug 22, 2012
title Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Leucettine L4
authors A.E.Oberholzer, L.H.Pearl
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A
Fragment: Residues 35-384
Synonym: Gsk-3 Beta, Serinethreonine-Protein Kinase Gsk3b
Ec: 2.7.11.26, 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac Hta

Molecule: Axin-1
Chain: B
Fragment: Residues 383-400
Synonym: Axis Inhibition Protein 1, Haxin
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.195 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.577 81.577 283.654 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.77 Å
ligand CWT enzyme Transferase E.C.2.7.11.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelectivity, co-crystal structures and neuroprotective properties of Leucettines, a family of protein kinase inhibitors derived from the marine sponge alkaloid Leucettamine B., Tahtouh T, Elkins JM, Filippakopoulos P, Soundararajan M, Burgy G, Durieu E, Cochet C, Schmid R, Lo D, Delhommel F, Oberholzer A, Laurence P, Carreaux F, Bazureau JP, Knapp S, Meijer L, J Med Chem. 2012 Sep 21. PMID:22998443
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (4b7t.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 4B7T
  • CSU: Contacts of Structural Units for 4B7T
  • Structure Factors (114 Kb)
  • Retrieve 4B7T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B7T from S2C, [Save to disk]
  • Re-refined 4b7t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B7T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B7T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B7T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b7t] [4b7t_A] [4b7t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B7T: [S_TKc ] by SMART
  • Other resources with information on 4B7T
  • Community annotation for 4B7T at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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