4B8M Cell Cycle date Aug 28, 2012
title Aurora B Kinase In Complex With Vx-680
authors F.Sessa, F.Villa
compound source
Molecule: Aurora Kinase B-A
Chain: A, B
Fragment: Residues 78-361
Synonym: Auroraipl1-Related Kinase 2-A, Airk2-A, Xairk2-A, Serinethreonine-Protein Kinase 12-A, Serinethreonine-Pro Kinase Aurora-B-A, Xaurora-B;
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inner Centromere Protein A
Chain: C, D
Fragment: Residues 797-840
Synonym: Xl-Incenp, Xinc, Xincenp, Mitotic Phosphoprotein 1
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.19078 R_Free 0.23561
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.787 67.259 116.755 90.00 96.58 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand TPO, VX6 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (4b8m.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4b8m.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4B8M
  • CSU: Contacts of Structural Units for 4B8M
  • Structure Factors (745 Kb)
  • Retrieve 4B8M in mmCIF format [Save to disk]
  • Re-refined 4b8m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4B8M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4B8M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B8M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b8m_B] [4b8m_C] [4b8m_D] [4b8m] [4b8m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B8M: [S_TKc ] by SMART
    • Other resources with information on 4B8M
  • Community annotation for 4B8M at PDBWiki (http://pdbwiki.org)

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