4B94 Transferase date Aug 31, 2012
title Crystal Structure Of Human Mps1 Tpr Domain
authors D.Littler, E.Von Castelmur, V.De Marco, A.Perrakis
compound source
Molecule: Dual Specificity Protein Kinase Ttk
Chain: A, B, C, D
Fragment: Tpr Domain, Residues 62-239
Synonym: Mps1, Phosphotyrosine Picked Threonine-Protein Kin
Ec: 2.7.12.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: T1r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petnki-His-3c-Lic-Kan
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.920 80.137 142.212 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, MLI, PEG, PG4, PGE enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA TPR domain-containing N-terminal module of MPS1 is required for its kinetochore localization by Aurora B., Nijenhuis W, von Castelmur E, Littler D, De Marco V, Tromer E, Vleugel M, van Osch MH, Snel B, Perrakis A, Kops GJ, J Cell Biol. 2013 Apr 15;201(2):217-31. doi: 10.1083/jcb.201210033. Epub 2013 Apr, 8. PMID:23569217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (4b94.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (4b94.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (4b94.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (4b94.pdb4.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4B94
  • CSU: Contacts of Structural Units for 4B94
  • Structure Factors (880 Kb)
  • Retrieve 4B94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B94 from S2C, [Save to disk]
  • Re-refined 4b94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B94
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B94, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b94_A] [4b94_C] [4b94_B] [4b94_D] [4b94]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B94
  • Community annotation for 4B94 at PDBWiki (http://pdbwiki.org)

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