4BBG Cell Cycle date Sep 22, 2012
title Crystal Structure Of Human Kinesin Eg5 In Complex With 3-((( Aminoethyl)Sulfanyl)(3-Ethylphenyl) Phenylmethyl)Phenol
authors H.Y.K.Kaan, F.Kozielski
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A
Fragment: Motor Domain, Residues 1 - 368
Synonym: Kinesin-Like Protein 1, Kinesin-Like Spindle Prote Kinesin-Related Motor Protein Eg5, Thyroid Receptor-Interac Protein 5, Tr-Interacting Protein 5, Trip-5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
symmetry Space Group: I 21 3
R_factor 0.182 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.190 158.190 158.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand ADP, CL, MG, V02 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimized S-trityl-L-cysteine-based inhibitors of kinesin spindle protein with potent in vivo antitumor activity in lung cancer xenograft models., Good JA, Wang F, Rath O, Kaan HY, Talapatra SK, Podgorski D, MacKay SP, Kozielski F, J Med Chem. 2013 Mar 14;56(5):1878-93. doi: 10.1021/jm3014597. Epub 2013 Feb 27. PMID:23394180
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4bbg.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 4BBG
  • CSU: Contacts of Structural Units for 4BBG
  • Structure Factors (717 Kb)
  • Retrieve 4BBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BBG from S2C, [Save to disk]
  • Re-refined 4bbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BBG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BBG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bbg_A] [4bbg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BBG: [KISc ] by SMART
  • Other resources with information on 4BBG
  • Community annotation for 4BBG at PDBWiki (http://pdbwiki.org)

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