4BCZ Oxidoreductase date Oct 03, 2012
title Monomeric Human Cu,Zn Superoxide Dismutase, Loops Iv And Vii Apo Form.
authors K.Saraboji, W.Awad, J.Danielsson, L.Lang, M.Kurnik, S.L.Marklund, M.Oliveberg, D.T.Logan
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B
Fragment: Residues 2049,83-124,141-154
Synonym: Superoxide Dismutase 1, Hsod1
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 65
R_factor 0.169 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.430 74.430 59.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.93 Å
ligand
enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGlobal structural motions from the strain of a single hydrogen bond., Danielsson J, Awad W, Saraboji K, Kurnik M, Lang L, Leinartaite L, Marklund SL, Logan DT, Oliveberg M, Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3829-34. doi:, 10.1073/pnas.1217306110. Epub 2013 Feb 19. PMID:23431167
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4bcz.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (4bcz.pdb2.gz) 34 Kb
  • CSU: Contacts of Structural Units for 4BCZ
  • Structure Factors (202 Kb)
  • Retrieve 4BCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BCZ from S2C, [Save to disk]
  • Re-refined 4bcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BCZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BCZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bcz_A] [4bcz] [4bcz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BCZ
  • Community annotation for 4BCZ at PDBWiki (http://pdbwiki.org)

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