4BE9 Hydrolase date Mar 06, 2013
title Open Conformation Of O. Piceae Sterol Esterase
authors J.Gutierrez-Fernandez, M.E.Vaquero, A.Prieto, J.Barriuso, M.J.Go J.A.Hermoso
compound source
Molecule: Sterol Esterase
Chain: A, B
Fragment: Residues 13-549
Ec: 3.1.1.13
Engineered: Yes
Other_details: N-Acetylglucosamine Glycosylations In Positi And 380
Organism_scientific: Ophiostoma Piceae
Organism_taxid: 61273
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Km71
Expression_system_vector_type: Plasmid
Expression_system_vector: Ppic9
symmetry Space Group: I 41
R_factor 0.168 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.123 164.123 93.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1PE, 7P9, GOL, NAG, NO3, PEG, PGE enzyme Hydrolase E.C.3.1.1.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of Ophiostoma piceae sterol esterase: Structural insights into activation mechanism and product release., Gutierrez-Fernandez J, Vaquero ME, Prieto A, Barriuso J, Martinez MJ, Hermoso JA, J Struct Biol. 2014 Sep;187(3):215-22. doi: 10.1016/j.jsb.2014.07.007. Epub 2014 , Aug 7. PMID:25108239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (4be9.pdb1.gz) 368 Kb
  • LPC: Ligand-Protein Contacts for 4BE9
  • CSU: Contacts of Structural Units for 4BE9
  • Structure Factors (3118 Kb)
  • Retrieve 4BE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BE9 from S2C, [Save to disk]
  • Re-refined 4be9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BE9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BE9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4be9_A] [4be9_B] [4be9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BE9
  • Community annotation for 4BE9 at PDBWiki (http://pdbwiki.org)

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