4BGH	Transferase	date	Mar 26, 2013
title	Crystal Structure Of Cdk2 In Complex With Pan-Cdk Inhibitor
authors	U.Luecking, R.Jautelat, M.Krueger, T.Brumby, P.Lienau, M.Schaefer J.Schulze, A.Hillisch, A.Reichel, G.Siemeister
compound		source
Molecule: Cyclin-Dependent Kinase 2 Chain: A Fragment: Catalytic Domain, Residues 1-298 Synonym: Cell Division Protein Kinase 2, P33 Protein Kinase Ec: 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.19312 R_Free 0.24616
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.076 71.795 72.196 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	3I6	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The lab oddity prevails: discovery of pan-CDK inhibitor (R)-S-cyclopropyl-S-(4-{[4-{[(1R,2R)-2-hydroxy-1-methylpropyl]oxy}-5-(trifluorome thyl)pyrimidin-2-yl]amino}phenyl)sulfoximide (BAY 1000394) for the treatment of cancer., Lucking U, Jautelat R, Kruger M, Brumby T, Lienau P, Schafer M, Briem H, Schulze J, Hillisch A, Reichel A, Wengner AM, Siemeister G, ChemMedChem. 2013 Jul;8(7):1067-85. doi: 10.1002/cmdc.201300096. Epub 2013 May, 13. PMID:23671017

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (4bgh.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 4BGH CSU: Contacts of Structural Units for 4BGH Structure Factors (287 Kb) Retrieve 4BGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BGH from S2C, [Save to disk] Re-refined 4bgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BGH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BGH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BGH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bgh_A] [4bgh] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4BGH: [S_TKc ] by SMART

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