4BKX	Transcription	date	Apr 30, 2013
title	The Structure Of Hdac1 In Complex With The Dimeric Elm2-Sant Mta1 From The Nurd Complex
authors	C.J.Millard, P.J.Watson, I.Celardo, Y.Gordiyenko, S.M.Cowley, C.V.Robinson, L.Fairall, J.W.R.Schwabe
compound		source
Molecule: Metastasis-Associated Protein Mta1 Chain: A Fragment: Elm2-Sant Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293f Expression_system_vector: Pcdna3
Molecule: Histone Deacetylase 1 Chain: B Synonym: Hd1 Ec: 3.5.1.98 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293f Expression_system_vector: Pcdna3
symmetry	Space Group: P 32 2 1	R_factor 0.211 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.199 108.199 133.164 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	ACT, K, SO4, ZN	enzyme	Hydrolase E.C.3.5.1.98 BRENDA
Gene Ontology	Chain Function Process Component B histone deacetylase activity...
Primary reference	Class I HDACs Share a Common Mechanism of Regulation by Inositol Phosphates., Millard CJ, Watson PJ, Celardo I, Gordiyenko Y, Cowley SM, Robinson CV, Fairall L, Schwabe JW, Mol Cell. 2013 Jun 19. pii: S1097-2765(13)00407-3. doi:, 10.1016/j.molcel.2013.05.020. PMID:23791785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (4bkx.pdb1.gz) 168 Kb LPC: Ligand-Protein Contacts for 4BKX CSU: Contacts of Structural Units for 4BKX Structure Factors (589 Kb) Retrieve 4BKX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BKX from S2C, [Save to disk] Re-refined 4bkx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BKX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BKX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BKX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bkx_A] [4bkx_B] [4bkx] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4BKX: [ELM2] [SANT ] by SMART

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