4BL7 Translation date May 02, 2013
title Crystal Structure Of The Aimp3-Mrs N-Terminal Domain Complex Different Space Group
authors H.Y.Cho, W.W.Seo, H.J.Cho, B.S.Kang
compound source
Molecule: Methionine--Trna Ligase, Cytoplasmic
Chain: A
Fragment: N-Terminal Domain, Residues 1-224
Synonym: Methionyl-Trna Synthetase, Metrs
Ec: 6.1.1.10
Engineered: Yes
Other_details: M1 To E224 Of Mrs N-Terminus Domain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2

Molecule: Eukaryotic Translation Elongation Factor 1 Epsilo
Chain: B
Synonym: Aminoacyl Trna Synthetase Complex-Interacting Multifunctional Protein 3, Elongation Factor P18, Multisynt Complex Auxiliary Component P18, Aimp3;
Engineered: Yes
Mutation: Yes
Other_details: M1 To H174 Of Aimp3 With Additional S Sequen N-Terminus Due To Cloning Procedure

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 2 21 21
R_factor 0.180 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.685 72.029 123.417 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand
enzyme Ligase E.C.6.1.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (4bl7.pdb1.gz) 125 Kb
  • CSU: Contacts of Structural Units for 4BL7
  • Structure Factors (326 Kb)
  • Retrieve 4BL7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BL7 from S2C, [Save to disk]
  • Re-refined 4bl7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BL7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BL7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BL7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bl7_B] [4bl7] [4bl7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BL7
  • Community annotation for 4BL7 at PDBWiki (http://pdbwiki.org)

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