4BMM Crystal structure of Trypanosoma cruzi CYP51 bound to the inhibitor (R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-2',3, 5'-trifluoro-(1,1'-biphenyl)-4-carboxamide date
authors Choi, J.Y., Calvet, C.M., Gunatilleke, S.S., Roush, W.R., McKerrow, J.H., Podust, L.M.
compound source
symmetry
R_factor
R_Free 0.29005
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.84
ligand HEM, TU1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary reference4-Aminopyridyl-Based CYP51 Inhibitors as Anti-Trypanosoma cruzi Drug Leads with Improved Pharmacokinetic Profile and in Vivo Potency., Calvet CM, Vieira DF, Choi JY, Kellar D, Cameron MD, Siqueira-Neto JL, Gut J, Johnston JB, Lin L, Khan S, McKerrow JH, Roush WR, Podust LM, J Med Chem. 2014 Aug 19. PMID:25101801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (598 Kb) [Save to disk]
  • Biological Unit Coordinates (4bmm.pdb1.gz) 297 Kb
  • Biological Unit Coordinates (4bmm.pdb2.gz) 295 Kb
  • LPC: Ligand-Protein Contacts for 4BMM
  • CSU: Contacts of Structural Units for 4BMM
  • Structure Factors (2036 Kb)
  • Retrieve 4BMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BMM from S2C, [Save to disk]
  • Re-refined 4bmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BMM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BMM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bmm] [4bmm_C] [4bmm_D] [4bmm_A] [4bmm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BMM
  • Community annotation for 4BMM at PDBWiki (http://pdbwiki.org)

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