4BQA Transcription date May 30, 2013
title Crystal Structure Of The Ets Domain Of Human Ets2 In Complex
authors J.A.Newman, C.D.O.Cooper, T.Krojer, C.H.Arrowsmith, C.Bountra, A. O.Gileadi
compound source
Molecule: Protein C-Ets-2
Chain: A, D, G
Fragment: Ets Domain, Residues 325-464
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: 5'-D(Apcpcpgpgpapapgptpgp)-3'
Chain: B, E, H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 5'-D(Cpapcptptpcpcpgpgptp)-3'
Chain: C, F, I
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.234 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.674 96.964 83.803 90.00 97.06 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, G


Primary referenceStructural insights into the autoregulation and cooperativity of the human transcription factor ets-2., Newman JA, Cooper CD, Aitkenhead H, Gileadi O, J Biol Chem. 2015 Mar 27;290(13):8539-49. doi: 10.1074/jbc.M114.619270. Epub 2015, Feb 10. PMID:25670864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4bqa.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4bqa.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (4bqa.pdb3.gz) 24 Kb
  • CSU: Contacts of Structural Units for 4BQA
  • Structure Factors (719 Kb)
  • Retrieve 4BQA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BQA from S2C, [Save to disk]
  • Re-refined 4bqa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BQA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BQA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BQA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bqa_B] [4bqa_D] [4bqa_E] [4bqa_I] [4bqa_C] [4bqa_G] [4bqa_F] [4bqa_A] [4bqa_H] [4bqa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BQA: [ETS ] by SMART
    • Other resources with information on 4BQA
  • Community annotation for 4BQA at PDBWiki (http://pdbwiki.org)

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