4BQX Oxidoreductase date Jun 03, 2013
title Hif Prolyl Hydroxylase 2 (Phd2 Egln1) In Complex With Mn(II [(1-Chloro-4-Hydroxyisoquinolin-3-Yl)Carbonyl]Glycine (Iox3
authors R.Chowdhury, C.J.Schofield
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Fragment: Catalytic Domain, Residues 181-426
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Prolyl Hydroxylase 2, Hph-2, Prolyl Hydroxylase Domain-Cont Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a
symmetry Space Group: P 63
R_factor 0.211 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.600 109.600 39.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.79 Å
ligand MN, UN9 enzyme Oxidoreductase E.C.1.14.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelective Small Molecule Probes for the Hypoxia Inducible Factor (HIF) Prolyl Hydroxylases., Chowdhury R, Candela-Lena JI, Chan MC, Greenald DJ, Yeoh KK, Tian YM, McDonough MA, Tumber A, Rose NR, Conejo-Garcia A, Demetriades M, Mathavan S, Kawamura A, Lee MK, van Eeden F, Pugh CW, Ratcliffe PJ, Schofield CJ, ACS Chem Biol. 2013 May 17. PMID:23683440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4bqx.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4BQX
  • CSU: Contacts of Structural Units for 4BQX
  • Structure Factors (1236 Kb)
  • Retrieve 4BQX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BQX from S2C, [Save to disk]
  • Re-refined 4bqx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BQX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BQX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BQX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bqx] [4bqx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BQX: [P4Hc ] by SMART
  • Other resources with information on 4BQX
  • Community annotation for 4BQX at PDBWiki (http://pdbwiki.org)

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