4BR6 Oxidoreductase date Jun 04, 2013
title Crystal Structure Of Chaetomium Thermophilum Mnsod
authors T.Haikarainen, C.Frioux, L.Q.Zhnag, D.C.Li, A.C.Papageorgiou
compound source
Molecule: Superoxide Dismutase
Chain: A, B, C, D
Synonym: Manganese Superoxide Dismutase
Ec: 1.15.1.1
Organism_scientific: Chaetomium Thermophilum
Organism_taxid: 209285
symmetry Space Group: P 61
R_factor 0.120 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.140 69.140 300.430 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, MN3, NA enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure and biochemical characterization of a manganese superoxide dismutase from Chaetomium thermophilum., Haikarainen T, Frioux C, Zhnag LQ, Li DC, Papageorgiou AC, Biochim Biophys Acta. 2013 Dec 3. pii: S1570-9639(13)00420-2. doi:, 10.1016/j.bbapap.2013.11.014. PMID:24316252
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (4br6.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4BR6
  • CSU: Contacts of Structural Units for 4BR6
  • Structure Factors (408 Kb)
  • Retrieve 4BR6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BR6 from S2C, [Save to disk]
  • Re-refined 4br6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BR6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BR6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BR6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4br6_C] [4br6_A] [4br6_B] [4br6_D] [4br6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BR6
  • Community annotation for 4BR6 at PDBWiki (http://pdbwiki.org)

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