4BY0 Crystal structure of Trypanosoma cruzi CYP51 bound to the inhibitor (R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-3,3'- difluoro-(1,1'-biphenyl)-4-carboxamide date
authors Choi, J.Y., Calvet, C.M., Vierira, D.F., Gunatilleke, S.S., Cameron, M.D., McKerrow, J.H., Podust, L.M., Roush, W.R.
compound source
symmetry
R_factor
R_Free 0.29748
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand 5PS, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceR-Configuration of 4-Aminopyridyl-Based Inhibitors of CYP51 Confers Superior Efficacy Against Trypanosoma cruzi., Choi JY, Calvet CM, Vieira DF, Gunatilleke SS, Cameron MD, McKerrow JH, Podust LM, Roush WR, ACS Med Chem Lett. 2014 Jan 22;5(4):434-9. doi: 10.1021/ml500010m. eCollection, 2014 Apr 10. PMID:24900854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4by0.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (4by0.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4BY0
  • CSU: Contacts of Structural Units for 4BY0
  • Structure Factors (811 Kb)
  • Retrieve 4BY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BY0 from S2C, [Save to disk]
  • Re-refined 4by0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BY0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BY0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4by0_B] [4by0_A] [4by0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4BY0
  • Community annotation for 4BY0 at PDBWiki (http://pdbwiki.org)

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