4BZC Crystal structure of the tetrameric dGTP-bound wild type SAMHD1 catalytic core date
authors Ji, X., Yang, H., Wu, Y., Yan, J., Mehrens, J., DeLucia, M., Hao, C., Gronenborn, A.M., Skowronski, J., Ahn, J., Xiong, Y.
compound source
symmetry
R_factor
R_Free 0.24480
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.88
ligand MG, MN, T8T enzyme
Primary referenceMechanism of allosteric activation of SAMHD1 by dGTP., Ji X, Wu Y, Yan J, Mehrens J, Yang H, Delucia M, Hao C, Gronenborn AM, Skowronski J, Ahn J, Xiong Y, Nat Struct Mol Biol. 2013 Oct 20. doi: 10.1038/nsmb.2692. PMID:24141705
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (665 Kb) [Save to disk]
  • Biological Unit Coordinates (4bzc.pdb1.gz) 653 Kb
  • LPC: Ligand-Protein Contacts for 4BZC
  • CSU: Contacts of Structural Units for 4BZC
  • Structure Factors (511 Kb)
  • Retrieve 4BZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BZC from S2C, [Save to disk]
  • Re-refined 4bzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BZC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BZC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bzc_B] [4bzc_D] [4bzc] [4bzc_C] [4bzc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BZC: [HDc ] by SMART
  • Other resources with information on 4BZC
  • Community annotation for 4BZC at PDBWiki (http://pdbwiki.org)

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