4C0C Crystal structure of Trypanosoma cruzi CYP51 bound to the inhibitor (R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-4-(4-(2,4-difluorophenyl)piperazin-1-yl)-2-fluorobenzamide. date
authors Calvet, C.M., Vieira, D.F., Choi, J.Y., Cameron, M.D., Gut, J., Kellar, D., Siqueira-Neto, J.L., McKerrow, J.H., Roush, W.R., Podust, L.M.
compound source
symmetry
R_factor
R_Free 0.25365
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.04
ligand GOL, HEM, SO4, WVH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference4-Aminopyridyl-Based CYP51 Inhibitors as Anti-Trypanosoma cruzi Drug Leads with Improved Pharmacokinetic Profile and in Vivo Potency., Calvet CM, Vieira DF, Choi JY, Kellar D, Cameron MD, Siqueira-Neto JL, Gut J, Johnston JB, Lin L, Khan S, McKerrow JH, Roush WR, Podust LM, J Med Chem. 2014 Aug 19. PMID:25101801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4c0c.pdb1.gz) 229 Kb
  • LPC: Ligand-Protein Contacts for 4C0C
  • CSU: Contacts of Structural Units for 4C0C
  • Structure Factors (687 Kb)
  • Retrieve 4C0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C0C from S2C, [Save to disk]
  • Re-refined 4c0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4C0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4C0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C0C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c0c] [4c0c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4C0C
  • Community annotation for 4C0C at PDBWiki (http://pdbwiki.org)

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