4C4E Structure-based design of orally bioavailable pyrrolopyridine inhibitors of the mitotic kinase MPS1 date
authors Naud, S., Westwood, I.M., Faisal, A., Sheldrake, P., Bavetsias, V., Atrash, B., Liu, M., Hayes, A., Schmitt, J., Wood, A., Choi, V., Boxall, K., Mak, G., Gurden, M., Valenti, M., Brandon, A.de.Haven., Henley, A., Baker, R., McAndrew, C., Matijssen, B., Burke, R., Eccles, S.A., Raynaud, F.I., Linardopoulos, S., Montfort, R.van., Blagg, J.
compound source
symmetry
R_factor
R_Free 0.2116
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 1PE, 4T9, 7PE, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-Based Design of Orally Bioavailable 1H-Pyrrolo[3,2-c]pyridine Inhibitors of Mitotic Kinase Monopolar Spindle 1 (MPS1)., Naud S, Westwood IM, Faisal A, Sheldrake P, Bavetsias V, Atrash B, Cheung KM, Liu M, Hayes A, Schmitt J, Wood A, Choi V, Boxall K, Mak G, Gurden M, Valenti M, de Haven Brandon A, Henley A, Baker R, McAndrew C, Matijssen B, Burke R, Hoelder S, Eccles SA, Raynaud FI, Linardopoulos S, van Montfort RL, Blagg J, J Med Chem. 2013 Dec 2. PMID:24256217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4c4e.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4C4E
  • CSU: Contacts of Structural Units for 4C4E
  • Structure Factors (794 Kb)
  • Retrieve 4C4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C4E from S2C, [Save to disk]
  • Re-refined 4c4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C4E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C4E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c4e_A] [4c4e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4C4E: [S_TKc ] by SMART
  • Other resources with information on 4C4E
  • Community annotation for 4C4E at PDBWiki (http://pdbwiki.org)

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