4CAD Mechanism of farnesylated CAAX protein processing by the integral membrane protease Rce1 date
authors Kulkarni, K., Manolaridis, I., Dodd, R.B., Cronin, N., Ogasawara, S., Iwata, S., Barford, D.
compound source
symmetry
R_factor
R_Free 0.2669
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand BOG, LMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, I, L


Primary referenceMechanism of farnesylated CAAX protein processing by the intramembrane protease Rce1., Manolaridis I, Kulkarni K, Dodd RB, Ogasawara S, Zhang Z, Bineva G, O'Reilly N, Hanrahan SJ, Thompson AJ, Cronin N, Iwata S, Barford D, Nature. 2013 Dec 1. doi: 10.1038/nature12754. PMID:24291792
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (917 Kb) [Save to disk]
  • Biological Unit Coordinates (4cad.pdb1.gz) 230 Kb
  • Biological Unit Coordinates (4cad.pdb2.gz) 231 Kb
  • Biological Unit Coordinates (4cad.pdb3.gz) 230 Kb
  • Biological Unit Coordinates (4cad.pdb4.gz) 233 Kb
  • LPC: Ligand-Protein Contacts for 4CAD
  • CSU: Contacts of Structural Units for 4CAD
  • Structure Factors (2271 Kb)
  • Retrieve 4CAD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CAD from S2C, [Save to disk]
  • Re-refined 4cad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CAD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CAD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cad_E] [4cad_L] [4cad_B] [4cad_A] [4cad_C] [4cad_J] [4cad_K] [4cad_H] [4cad] [4cad_F] [4cad_D] [4cad_I] [4cad_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CAD: [IG_like] [IGv ] by SMART
    • Other resources with information on 4CAD
  • Community annotation for 4CAD at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science