4CAK Three-dimensional reconstruction of intact human integrin alphaIIbbeta3 in a phospholipid bilayer nanodisc date
authors Choi, W.S., Rice, W.J., Stokes, D.L., Coller, B.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 20.50
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • smooth muscle cell migration...

    • Primary referenceThree-dimensional reconstruction of intact human integrin alphaIIbbeta3; new implications for activation-dependent ligand binding., Choi WS, Rice WJ, Stokes DL, Coller BS, Blood. 2013 Oct 17. PMID:24136164
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (4cak.pdb1.gz) 292 Kb
  • LPC: Ligand-Protein Contacts for 4CAK
  • CSU: Contacts of Structural Units for 4CAK
  • Retrieve 4CAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CAK from S2C, [Save to disk]
    • View 4CAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CAK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CAK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cak_B] [4cak] [4cak_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CAK: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART
    • Other resources with information on 4CAK
  • Community annotation for 4CAK at PDBWiki (http://pdbwiki.org)

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