4CDB Crystal structure of listeriolysin O date
authors Koester, S., Yildiz, O.
compound source
symmetry
R_factor
R_Free 0.2459
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand ACT, NA, TAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceCrystal structure of listeriolysin O reveals molecular details of oligomerization and pore formation., Koster S, van Pee K, Hudel M, Leustik M, Rhinow D, Kuhlbrandt W, Chakraborty T, Yildiz O, Nat Commun. 2014 Apr 22;5:3690. doi: 10.1038/ncomms4690. PMID:24751541
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (4cdb.pdb1.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 4CDB
  • CSU: Contacts of Structural Units for 4CDB
  • Structure Factors (268 Kb)
  • Retrieve 4CDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CDB from S2C, [Save to disk]
  • Re-refined 4cdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CDB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CDB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cdb] [4cdb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4CDB
  • Community annotation for 4CDB at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science